MCMC diagnostics - Growth

Test v1.0 - Basic growth

Compare the convergence of the model using two different variables to predict the competition effect:

• sim1: canopyDistance
• sim2: Basal area (BA)

Rhat

Divergent transitions

Density plot of each parameter by species id

Data distribution

Size, temperature, precipitation and competition effect

Predictions

Out-of-bag predictions

Mean squared error (MSE) of out-of-bag predictions

Sampling time